關於「HISAT2 download」標籤，搜尋引擎有相關的訊息討論：

Download | HISAT2。

Download. Please cite: Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.： 。

HISAT2 graph-based alignment of next generation sequencing ...。

Due to a high volume of index downloads, we have moved HISAT2 index files to a different location in order to provide faster download speed.： 。

HISAT - Center for Computational Biology。

hisat -x /path/to/index --sra-acc SRR353653; This eliminates the need to download SRA reads manually and to convert them into fasta/fastq format without ...： 。

Hisat2 - conda install - :: Anaconda.org。

bioconda / packages / hisat2 2.2.1. 2 · License: GPL-3.0 · 138136 total downloads · Last upload: 5 months and 16 days ago ...： 。

(PDF) HISAT: A fast spliced aligner with low memory requirements。

2015年3月9日 · PDF | HISAT (hierarchical indexing for spliced alignment of transcripts) is ... For reads with shorter anchors (1–7 bp), the two-pass algo-.。

Graph-based genome alignment and genotyping with HISAT2 and ...。

We apply HISAT2 for HLA typing and DNA fingerprinting; both applications form part of the HISAT-genotype software that enables analysis of haplotype-resolved ...。

CIRCexplorer pipelines for circRNA annotation and quantification ...。

2021年2月12日 · As an intermediate step, samtools and bedtools are used to transfer the “PA1_rm.sam” to BAM format file (PA1_rm_sorted.bam) and to obtain HISAT2 ...。

Cloud accelerated alignment and assembly of full-length single-cell ...。

2019年12月30日 · The alignment tool - STAR or HISAT2 - is then executed using ... Fuccillo MV, Földy C, Gökce Ö, Rothwell PE, Sun GL, Malenka RC, Südhof TC.。

HSRA: Hadoop-based spliced read aligner for RNA sequencing data。

2018年7月31日 · PLOS views and downloads. 5. Share · Sum of Facebook, Twitter, Reddit and Wikipedia activity. Open Access. Peer-reviewed. Research Article ...。

Elimination of reference mapping bias reveals robust immune ...。

2019年7月12日 · The remapping was carried out using HISAT2 (Kim et al., ... Raghupathy, N., Choi, K., Vincent, M. J., Beane, G. L., Sheppard, K. S., Munger, ...